DpseGA22774 protein (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DpseGA22774

Uncharacterized protein. (470 aa)

Predicted Functional Partners:

GA24994

0.997

DpseGA17112

0.983

DpseGA18654

0.879

DpseGA21432

0.823

Q298D7

0.816

Q28ZB8

0.727

DpseGA29178

0.681

DpseGA15324

0.663

DpseGA19001

0.656

Q292R0

0.614

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DpseGA15324	DpseGA17112	Q29IP7	Q29I80	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.983
DpseGA15324	DpseGA18654	Q29IP7	A0A0R3P0E1	Uncharacterized protein.	Uncharacterized protein, isoform B; Belongs to the PI3/PI4-kinase family.	0.825
DpseGA15324	DpseGA19001	Q29IP7	Q2M0V2	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.680
DpseGA15324	DpseGA21432	Q29IP7	A0A0R3NUT6	Uncharacterized protein.	Uncharacterized protein, isoform C.	0.729
DpseGA15324	DpseGA22774	Q29IP7	B5DKT6	Uncharacterized protein.	Uncharacterized protein.	0.663
DpseGA15324	DpseGA29178	Q29IP7	B5DMP8	Uncharacterized protein.	Uncharacterized protein.	0.999
DpseGA15324	GA24994	Q29IP7	B5E0H4	Uncharacterized protein.	Protein SMG8; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity).	0.658
DpseGA15324	Q28ZB8	Q29IP7	Q28ZB8	Uncharacterized protein.	Uncharacterized protein.	0.992
DpseGA15324	Q292R0	Q29IP7	Q292R0	Uncharacterized protein.	MRNA-decapping enzyme 1B.	0.671
DpseGA15324	Q298D7	Q29IP7	Q298D7	Uncharacterized protein.	Uncharacterized protein.	0.793
DpseGA17112	DpseGA15324	Q29I80	Q29IP7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.983
DpseGA17112	DpseGA19001	Q29I80	Q2M0V2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein, isoform A.	0.980
DpseGA17112	DpseGA21432	Q29I80	A0A0R3NUT6	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein, isoform C.	0.840
DpseGA17112	DpseGA22774	Q29I80	B5DKT6	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.983
DpseGA17112	DpseGA29178	Q29I80	B5DMP8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.998
DpseGA17112	GA24994	Q29I80	B5E0H4	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Protein SMG8; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity).	0.983
DpseGA17112	Q28ZB8	Q29I80	Q28ZB8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.966
DpseGA17112	Q292R0	Q29I80	Q292R0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	MRNA-decapping enzyme 1B.	0.513
DpseGA17112	Q298D7	Q29I80	Q298D7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.840
DpseGA18654	DpseGA15324	A0A0R3P0E1	Q29IP7	Uncharacterized protein, isoform B; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.825