B5DYB1 protein (Drosophila pseudoobscura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B5DYB1

Uncharacterized protein, isoform A. (248 aa)

Predicted Functional Partners:

DpseGA10369

0.949

A0A0R3NL21

0.697

DpseGA20377

0.674

DpseGA22295

0.597

DpseGA23612

0.597

B5DZ84

0.597

Q295X4

0.597

Q29BH0

0.597

DpseGA15321

0.597

Cdc42

0.597

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3NL21	B5DYB1	A0A0R3NL21	B5DYB1	Uncharacterized protein, isoform B.	Uncharacterized protein, isoform A.	0.697
A0A0R3NL21	B5DZ84	A0A0R3NL21	B5DZ84	Uncharacterized protein, isoform B.	Uncharacterized protein, isoform A.	0.911
A0A0R3NL21	Cdc42	A0A0R3NL21	Q29HY3	Uncharacterized protein, isoform B.	Cdc42 homolog; Regulates mbt kinase activity and is also required to recruit mbt to adherens junctions. Together with mbt, regulates photoreceptor cell morphogenesis (By similarity).	0.911
A0A0R3NL21	DpseGA10369	A0A0R3NL21	Q2M0M0	Uncharacterized protein, isoform B.	Uncharacterized protein.	0.986
A0A0R3NL21	DpseGA15321	A0A0R3NL21	Q29EV6	Uncharacterized protein, isoform B.	Uncharacterized protein.	0.911
A0A0R3NL21	DpseGA20377	A0A0R3NL21	Q29DN1	Uncharacterized protein, isoform B.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.806
A0A0R3NL21	DpseGA22295	A0A0R3NL21	A0A0R3P1Y3	Uncharacterized protein, isoform B.	Uncharacterized protein, isoform B.	0.911
A0A0R3NL21	DpseGA23612	A0A0R3NL21	B5DQJ0	Uncharacterized protein, isoform B.	Uncharacterized protein.	0.911
A0A0R3NL21	Q295X4	A0A0R3NL21	Q295X4	Uncharacterized protein, isoform B.	Ras-related C3 botulinum toxin substrate 1.	0.911
A0A0R3NL21	Q29BH0	A0A0R3NL21	Q29BH0	Uncharacterized protein, isoform B.	Ras-related C3 botulinum toxin substrate 1.	0.911
B5DYB1	A0A0R3NL21	B5DYB1	A0A0R3NL21	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform B.	0.697
B5DYB1	B5DZ84	B5DYB1	B5DZ84	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.597
B5DYB1	Cdc42	B5DYB1	Q29HY3	Uncharacterized protein, isoform A.	Cdc42 homolog; Regulates mbt kinase activity and is also required to recruit mbt to adherens junctions. Together with mbt, regulates photoreceptor cell morphogenesis (By similarity).	0.597
B5DYB1	DpseGA10369	B5DYB1	Q2M0M0	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.949
B5DYB1	DpseGA15321	B5DYB1	Q29EV6	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.597
B5DYB1	DpseGA20377	B5DYB1	Q29DN1	Uncharacterized protein, isoform A.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.674
B5DYB1	DpseGA22295	B5DYB1	A0A0R3P1Y3	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform B.	0.597
B5DYB1	DpseGA23612	B5DYB1	B5DQJ0	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.597
B5DYB1	Q295X4	B5DYB1	Q295X4	Uncharacterized protein, isoform A.	Ras-related C3 botulinum toxin substrate 1.	0.597
B5DYB1	Q29BH0	B5DYB1	Q29BH0	Uncharacterized protein, isoform A.	Ras-related C3 botulinum toxin substrate 1.	0.597