Q28ZW9 protein (Drosophila pseudoobscura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Q28ZW9

Nuclear pore complex protein Nup50. (703 aa)

Predicted Functional Partners:

DpseGA22586

0.952

DpseGA23660

0.903

DpseGA12719

0.844

Q299C1

0.820

Q28WZ2

0.816

DpseGA19671

0.812

Q299L4

0.811

DpseGA19826

0.810

Q290Y1

0.808

DpseGA18272

0.802

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DpseGA12719	DpseGA18272	Q29HL0	I5AMS3	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nucleoporin_N domain-containing protein.	0.538
DpseGA12719	DpseGA19671	Q29HL0	Q29FY5	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.539
DpseGA12719	DpseGA19826	Q29HL0	Q29KQ4	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.595
DpseGA12719	DpseGA22586	Q29HL0	A0A0R3P0C3	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein, isoform F.	0.938
DpseGA12719	DpseGA23660	Q29HL0	B5DLX3	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein, isoform A.	0.844
DpseGA12719	Q28WZ2	Q29HL0	Q28WZ2	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nuclear pore complex protein Nup214.	0.845
DpseGA12719	Q28ZW9	Q29HL0	Q28ZW9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nuclear pore complex protein Nup50.	0.844
DpseGA12719	Q290Y1	Q29HL0	Q290Y1	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.570
DpseGA12719	Q299C1	Q29HL0	Q299C1	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nuclear pore complex protein Nup98-Nup96.	0.621
DpseGA12719	Q299L4	Q29HL0	Q299L4	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nuclear pore complex protein Nup43.	0.557
DpseGA18272	DpseGA12719	I5AMS3	Q29HL0	Nucleoporin_N domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.538
DpseGA18272	DpseGA19671	I5AMS3	Q29FY5	Nucleoporin_N domain-containing protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.998
DpseGA18272	DpseGA19826	I5AMS3	Q29KQ4	Nucleoporin_N domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.994
DpseGA18272	DpseGA22586	I5AMS3	A0A0R3P0C3	Nucleoporin_N domain-containing protein.	Uncharacterized protein, isoform F.	0.972
DpseGA18272	DpseGA23660	I5AMS3	B5DLX3	Nucleoporin_N domain-containing protein.	Uncharacterized protein, isoform A.	0.802
DpseGA18272	Q28WZ2	I5AMS3	Q28WZ2	Nucleoporin_N domain-containing protein.	Nuclear pore complex protein Nup214.	0.990
DpseGA18272	Q28ZW9	I5AMS3	Q28ZW9	Nucleoporin_N domain-containing protein.	Nuclear pore complex protein Nup50.	0.802
DpseGA18272	Q290Y1	I5AMS3	Q290Y1	Nucleoporin_N domain-containing protein.	Uncharacterized protein.	0.995
DpseGA18272	Q299C1	I5AMS3	Q299C1	Nucleoporin_N domain-containing protein.	Nuclear pore complex protein Nup98-Nup96.	0.983
DpseGA18272	Q299L4	I5AMS3	Q299L4	Nucleoporin_N domain-containing protein.	Nuclear pore complex protein Nup43.	0.987