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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB90511.1Uncharacterized beta-barrel protein YwiB, DUF1934 family. (147 aa)    
Predicted Functional Partners:
SCB87817.1
Hypothetical protein.
  
    0.741
SCC04202.1
Uncharacterized protein YpbB.
  
     0.728
SCB90812.1
Hypothetical protein.
  
     0.694
SCC14755.1
MerR HTH family regulatory protein.
  
     0.650
SCB87774.1
Uncharacterized protein.
  
     0.642
SCB90527.1
Hypothetical protein.
     
 0.621
SCB90441.1
Two-component signal transduction system YycFG, regulatory protein YycH.
  
     0.611
argS
arginyl-tRNA synthetase.
  
    0.577
SCC14724.1
Hypothetical protein.
  
     0.557
rpoE
DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
 
    0.547
Your Current Organism:
Weissella hellenica
NCBI taxonomy Id: 46256
Other names: ATCC 51523, CCUG 33494, DSM 7378, IFO 15553, JCM 10103, LMG 15125, LMG:15125, NBRC 15553, NCFB 2973, NCIMB 702973, W. hellenica, strain LV346
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.