Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ANN77265.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (599 aa)    
Predicted Functional Partners:
ANN76033.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.684
ANN77310.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.684
ANN77266.1
ATP-dependent RNA helicase HrpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.577
ANN78499.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.551
ANN79323.1
Disulfide bond formation protein DsbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.551
ANN78631.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.549
ANN77088.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.488
ANN80330.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.483
ANN79594.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.450
flhD
Flagellar transcriptional activator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family.
   
    0.444
Your Current Organism:
Bordetella flabilis
NCBI taxonomy Id: 463014
Other names: B. flabilis, Bordetella flabilis Vandamme et al. 2015, Bordetella sp. AU10664, CCUG 56827, LMG 28642, LMG:28642, strain AU10664
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