Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ANN77268.1Aspartyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)    
Predicted Functional Partners:
ANN79113.1
Aspartyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.903
ANN77657.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
ANN77269.1
DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
ANN77271.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
ANN77272.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
ANN77273.1
Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
ANN77270.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
ANN77274.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.431
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
      
 0.411
ANN78813.1
Hypothetical protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
      
 0.411
Your Current Organism:
Bordetella flabilis
NCBI taxonomy Id: 463014
Other names: B. flabilis, Bordetella flabilis Vandamme et al. 2015, Bordetella sp. AU10664, CCUG 56827, LMG 28642, LMG:28642, strain AU10664
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