Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANN77973.1Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)    
Predicted Functional Partners:
ANN78953.1
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.907
ANN76963.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.906
ANN78954.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.903
ANN79961.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.900
ANN77972.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.801
ANN77974.1
Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.775
ANN77975.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.601
ANN77976.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.601
ANN77970.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.471
ANN77969.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.461
Your Current Organism:
Bordetella flabilis
NCBI taxonomy Id: 463014
Other names: B. flabilis, Bordetella flabilis Vandamme et al. 2015, Bordetella sp. AU10664, CCUG 56827, LMG 28642, LMG:28642, strain AU10664
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