STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARP94142.1HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
 0.989
ARP96716.1
D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
 
  
 0.980
ARP97490.1
D-glycero-beta-D-manno-heptose-7-phosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.978
ARP94143.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.968
ARP97327.1
LPS biosynthesis glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.954
ARP94146.1
LPS biosynthesis transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.943
ARP94140.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.924
ARP96364.1
D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.923
ARP94144.1
Carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.886
ARP94141.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.859
Your Current Organism:
Bordetella genomosp. 13
NCBI taxonomy Id: 463040
Other names: B. genomosp. 13, Bordetella genogroup 13, Bordetella sp. AU7206
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