STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU86916.1Glycine betaine/proline transport system substrate-binding protein. (321 aa)    
Predicted Functional Partners:
SFU65891.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.999
SFU65906.1
Glycine betaine/proline transport system permease protein.
 
 0.998
SFU65921.1
Glycine betaine/proline transport system substrate-binding protein.
  
  
 
0.920
SFU76791.1
Glycine betaine/proline transport system substrate-binding protein.
  
  
 
0.825
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
 
     0.813
betB
Betaine-aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
     0.703
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
   
 0.671
SFU96407.1
Ferredoxin-NADP reductase.
  
  
 0.466
SFU86871.1
acyl-CoA dehydrogenase.
       0.448
SFU89775.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
     
 0.432
Your Current Organism:
Halomonas korlensis
NCBI taxonomy Id: 463301
Other names: CGMCC 1.6981, DSM 19633, H. korlensis, Halomonas korlensis Li et al. 2008, strain XK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.