Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0054Hypothetical protein. (93 aa)    
Predicted Functional Partners:
gshA
Glutamate--cysteine ligase.
  
     0.744
pssA
CDP-diacylglycerol-serine O-phosphatidyltransferase (phosphatidylserine synthase); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.669
Lgor_0132
IcmJ protein.
  
     0.634
Lgor_0138
Protein IcmL (DotI).
  
     0.564
Lgor_0141
Protein IcmO (DotL).
  
     0.563
dotC
Defect in organelle trafficking lipoprotein DotC.
  
     0.558
Lgor_2473
Hypothetical protein; Belongs to the UPF0250 family.
  
     0.551
Lgor_1939
Enhanced entry protein EnhA.
  
     0.548
dotA
Defect in organelle trafficking protein DotA.
  
     0.534
enhA_2
Enhanced entry protein EnhA.
  
     0.522
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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