STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilE_1Tfp pilus assembly protein, major type IV pilin class A. (141 aa)    
Predicted Functional Partners:
lspD_1
Type II protein secretion LspD.
 
 
 0.849
Lgor_0075
General secretion pathway, M protein.
 
   
 0.842
Lgor_0077
Hypothetical protein.
 
     0.839
lspE_1
Type II protein secretion ATPase LspE.
 
 0.796
pilC_1
Pilus assembly protein PilC.
 
    0.744
lspE_2
Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 0.684
pilB
Pilus assembly protein PilB.
  
 0.684
pilE_2
Type-IV pilin.
  
  
  0.642
pilN
Tfp pilus assembly protein PilN.
  
    0.611
lspJ
Type II secretory pathway protein LspJ.
   
 0.582
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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