Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0071Tetratricopeptide repeat protein. (339 aa)    
Predicted Functional Partners:
Lgor_0075
General secretion pathway, M protein.
 
     0.928
lspD_1
Type II protein secretion LspD.
 
 
  0.923
Lgor_0077
Hypothetical protein.
 
     0.911
Lgor_0072
Hypothetical protein.
 
     0.872
Lgor_0942
cNMP-binding protein.
   
 0.855
Lgor_0074
Hypothetical protein.
       0.799
Lgor_0076
Fimbrial assembly protein (PilN).
       0.798
lspE_1
Type II protein secretion ATPase LspE.
       0.779
arcB_4
Sensory histidine-kinase / response regulator.
    
 0.691
arcB_1
Sensory box histidine kinase/response regulator.
    
 0.691
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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