Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0076Fimbrial assembly protein (PilN). (215 aa)    
Predicted Functional Partners:
Lgor_0077
Hypothetical protein.
  
 0.973
pilM
Tfp pilus assembly protein, ATPase PilM.
  
 0.867
pilO
Tfp pilus assembly protein PilO.
  
 
 0.859
lspE_1
Type II protein secretion ATPase LspE.
   
 
 0.852
lspD_1
Type II protein secretion LspD.
     
 0.837
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
  
 
 0.827
Lgor_0074
Hypothetical protein.
  
    0.813
Lgor_0075
General secretion pathway, M protein.
       0.811
Lgor_0072
Hypothetical protein.
       0.799
Lgor_0071
Tetratricopeptide repeat protein.
       0.798
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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