STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yifBBifunctional enzyme and transcriptional regulator. (505 aa)    
Predicted Functional Partners:
smf
Protein smf.
 
 0.853
comF
Competence protein ComF.
 
  
 0.850
Lgor_2973
Hypothetical protein; Belongs to the UPF0102 family.
 
  
 0.727
yqiC
Membrane fusogenic activity.
       0.605
Lgor_0630
DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.586
ruvC
Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.502
glnK
Carbamoylphosphate synthase large subunit; Belongs to the P(II) protein family.
       0.469
comEA
Competence protein ComEA.
  
  
 0.456
flgG
Flagellar basal body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
   
   0.410
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.