STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yadGTransporter subunit: ATP-binding component of ABC superfamily protein. (304 aa)    
Predicted Functional Partners:
yadH
Transporter subunit: membrane component of ABC superfamily protein.
 
 0.979
ybhS
ABC transporter permease.
 
 
 
  0.644
ybhR_1
ABC transporter permease.
 
 
 
  0.638
ybhR_2
ABC transporter permease.
 
 
 
  0.609
atpD
ATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.592
atpA_2
ATP synthase F0F1 subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.576
Lgor_0197
2OG-Fe(II) oxygenase.
       0.550
Lgor_0196
Zinc metalloprotease.
       0.526
msbA_1
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
 
 
 
0.521
letS_1
Legionella transmission sensor LetS.
     
 0.519
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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