STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0229Hypothetical protein. (1001 aa)    
Predicted Functional Partners:
ftsX
Cell division ABC transporter permease FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.770
amiB
N-acetylmuramoyl-L-alanine amidase.
   
 0.755
cph1_2
Two-component sensor histidine kinase.
     
  0.629
yggG
Protease.
   
   0.622
cheA
Chemotaxis histidine kinase.
     
  0.523
arcB_4
Sensory histidine-kinase / response regulator.
     
  0.521
arcB_1
Sensory box histidine kinase/response regulator.
     
  0.521
pasI
Persistence and stress-resistance antitoxin PasI; Belongs to the UPF0125 (RnfH) family.
  
    0.480
ratA
Oligoketide cyclase/lipid transporter protein.
       0.480
estB_2
Phospholipase/carboxylesterase.
       0.480
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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