STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0332Conserved exported protein of unknown function. (162 aa)    
Predicted Functional Partners:
dacB_2
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
 
  
  0.715
Lgor_1275
LphB.
  
     0.662
Lgor_0470
Hypothetical protein.
  
     0.639
iraA
Small-molecule methyltransferase IraA.
  
     0.623
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
     
 0.615
secA_2
Coiled-coil protein.
  
     0.611
Lgor_1151
CAAX amino terminal protease self- immunity.
  
     0.608
dacB_1
D-Ala-D-Ala carboxypeptidase.
 
  
  0.562
Lgor_2363
Hypothetical protein.
  
     0.542
dacA
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.
    
  0.537
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.