Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
apxIB_2Toxin secretion ABC transporter ATP-binding protein. (522 aa)    
Predicted Functional Partners:
cvaA
Putative membrane fusion protein.
  0.986
Lgor_0360
Outer membrane component of multidrug efflux pump.
 
 
  0.975
lssD
Secretion system protein D.
 
 0.939
gltC
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.831
Lgor_0353
Hypothetical protein.
 
     0.788
Lgor_0355
Hypothetical protein; Belongs to the UPF0753 family.
 
     0.785
tolC
Outer membrane protein TolC.
  
 
 0.759
Lgor_2334
Hypothetical protein.
  
 
 0.719
nuoL_2
NADH-ubiquinone oxidoreductase chain 5.
  
    0.697
Lgor_0868
Outer membrane channel protein.
 
 
 0.666
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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