STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apxIB_2Toxin secretion ABC transporter ATP-binding protein. (522 aa)    
Predicted Functional Partners:
cvaA
Putative membrane fusion protein.
  0.981
Lgor_0360
Outer membrane component of multidrug efflux pump.
 
 
  0.960
lssD
Secretion system protein D.
 
 0.939
gltC
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.731
Lgor_2334
Hypothetical protein.
  
 
 0.698
msbA
Lipid A export ATP-binding/permease MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
    
  0.684
msbA_1
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
    
  0.684
abcT
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
    
  0.684
Lgor_2547
Multidrug resistance ABC transporter ATP binding protein.
    
  0.684
mdlB
Multidrug ABC transporter ATPase/permease.
    
  0.684
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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