STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0381Hypothetical protein. (364 aa)    
Predicted Functional Partners:
trpE
Anthranilate synthase.
   
 
  0.726
lasB
Virulence metalloprotease; Extracellular zinc metalloprotease.
   
 
 0.713
chiD
Chitinase.
   
 
 0.712
aprX
Subtilisin-like serine protease.
  
 
 0.675
celC
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 
 0.644
mdh_2
Alcohol dehydrogenase.
   
    0.588
Lgor_0721
Transmembrane protein (fibronectin III domain and Gp5 C-terminal repeat).
    
  0.573
Lgor_0080
Hypothetical protein.
    
 0.541
mlaE_2
ABC transporter permease.
       0.479
Lgor_0383
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
       0.479
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.