Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0385Transport protein. (199 aa)    
Predicted Functional Partners:
Lgor_0384
Mammalian cell entry related domain protein.
 
  0.994
Lgor_0383
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
 
 
  0.924
mlaE_2
ABC transporter permease.
 
 
  0.906
Lgor_2114
Putative helicase/relaxase.
  
     0.713
yrbD
Toluene transporter subunit: membrane component of ABC superfamily protein.
  
  0.698
Lgor_2688
Hypothetical protein.
  
     0.692
dotA
Defect in organelle trafficking protein DotA.
  
     0.689
pal
Peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL); Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
   0.685
Lgor_0955
Hypothetical protein.
  
     0.675
ybgF
Outer membrane protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
       0.670
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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