STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0471Cytokinin oxidase. (459 aa)    
Predicted Functional Partners:
Lgor_0470
Hypothetical protein.
 
     0.913
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 0.855
pdhB_1
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
    
 0.767
ndoR
Xylene monooxygenase.
    
 0.674
secA_2
Coiled-coil protein.
  
     0.589
cycA
Cytochrome c.
    
  0.571
Lgor_2346
Putative signal peptide protein.
    
  0.571
mdlB-2
FMN-dependent dehydrogenase.
  
 0.565
Lgor_1356
Putative Acetyltransferase, GNAT family.
  
 
 0.562
etfA
Electron transfer flavoprotein, alpha subunit.
 
 
 0.553
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.