STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0607Carbonic anhydrase. (246 aa)    
Predicted Functional Partners:
icfA
Carbonic anhydrase.
  
  
 
0.883
cynT
Inorganic transporter and to carbonic anhydrase (bi-functional).
  
 
 0.867
Lgor_0355
Hypothetical protein; Belongs to the UPF0753 family.
  
    0.608
lgrD_1
Peptide synthetase, non-ribosomal.
  
 0.603
yrdA
Transferase.
    
 0.595
hspA_3
Heat shock protein, Hsp20 family; Belongs to the small heat shock protein (HSP20) family.
       0.527
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
    
 0.476
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
       0.447
xthA
Exodeoxyribonuclease III.
       0.447
exoA
Exodeoxyribonuclease.
       0.447
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.