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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0630DNA internalization-related competence protein ComEC/Rec2. (738 aa)    
Predicted Functional Partners:
comF
Competence protein ComF.
 
  
 0.889
smf
Protein smf.
 
  
 0.886
pilD
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.800
ada
Ada protein (O6-methylguanine-DNA methyltransferase).
     
 0.740
pilC_1
Pilus assembly protein PilC.
   
  
 0.735
pilC_2
Pilus assembly protein PilC.
   
  
 0.735
lspF
Type II secretory pathway protein LspF.
   
  
 0.735
cls
Cardiolipin synthase.
 
 
 
 0.724
radC
DNA repair protein RadC; Belongs to the UPF0758 family.
 
  
 0.674
arcB_4
Sensory histidine-kinase / response regulator.
  
  
 0.660
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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