STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprM_4Outer membrane efflux protein. (453 aa)    
Predicted Functional Partners:
yibH_2
Hemolysin D.
 
  0.923
lmxE
Efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.820
mdtP
Outer membrane efflux lipoprotein.
  
  
  0.814
Lgor_0644
Hypothetical protein.
       0.779
Lgor_0645
Phage minor tail protein.
       0.779
mdtA
Multidrug efflux system, subunit A; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.756
lmxF
Multidrug efflux pump.
 
  0.751
yiaV_2
Hemolysin D.
 
  0.651
emrA_1
Multidrug efflux system.
  
  0.648
yibH_1
Hemolysin D.
  
  0.632
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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