STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacB_2D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase. (596 aa)    
Predicted Functional Partners:
Lgor_0691
LD-carboxypeptidase.
 
  
  0.788
Lgor_2632
Muramoyltetrapeptide carboxypeptidase.
 
  
  0.785
Lgor_1939
Enhanced entry protein EnhA.
  
  
  0.719
Lgor_0332
Conserved exported protein of unknown function.
 
  
  0.715
Lgor_1888
Hypothetical protein.
  
  
  0.710
enhA_1
Enhanced entry protein EnhA.
  
  
  0.704
Lgor_1466
Enhanced entry protein EnhA.
  
  
  0.700
enhA_2
Enhanced entry protein EnhA.
  
  
  0.697
rodA
Rod shape-determining protein rodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
     
 0.658
dacB_1
D-Ala-D-Ala carboxypeptidase.
  
  
 
0.644
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.