Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lgor_0691 | efp | Lgor_0691 | Lgor_0693 | LD-carboxypeptidase. | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. | 0.461 |
| Lgor_0691 | yjeK | Lgor_0691 | Lgor_0692 | LD-carboxypeptidase. | Lysine aminomutase. | 0.600 |
| Lgor_1054 | poxA | Lgor_1054 | Lgor_0502 | Transporting ATPase. | lysyl-tRNA synthetase. | 0.470 |
| Lgor_1054 | yjeK | Lgor_1054 | Lgor_0692 | Transporting ATPase. | Lysine aminomutase. | 0.471 |
| bioB | lysAC_1 | Lgor_3239 | Lgor_1365 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC). | 0.562 |
| bioB | lysAC_2 | Lgor_3239 | Lgor_1371 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.562 |
| bioB | yjeK | Lgor_3239 | Lgor_0692 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Lysine aminomutase. | 0.645 |
| cheR | yjeK | Lgor_0792 | Lgor_0692 | Methyltransferase involved in chemotaxis (CheR domain). | Lysine aminomutase. | 0.952 |
| cpg2_2 | lysAC_1 | Lgor_3280 | Lgor_1365 | Carboxypeptidase G2. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC). | 0.551 |
| cpg2_2 | lysAC_2 | Lgor_3280 | Lgor_1371 | Carboxypeptidase G2. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.551 |
| cpg2_2 | yjeK | Lgor_3280 | Lgor_0692 | Carboxypeptidase G2. | Lysine aminomutase. | 0.420 |
| deoC | yjeK | Lgor_2679 | Lgor_0692 | 2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate. | Lysine aminomutase. | 0.700 |
| efp | Lgor_0691 | Lgor_0693 | Lgor_0691 | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. | LD-carboxypeptidase. | 0.461 |
| efp | lysAC_1 | Lgor_0693 | Lgor_1365 | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC). | 0.648 |
| efp | lysAC_2 | Lgor_0693 | Lgor_1371 | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.648 |
| efp | poxA | Lgor_0693 | Lgor_0502 | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. | lysyl-tRNA synthetase. | 0.962 |
| efp | yjeK | Lgor_0693 | Lgor_0692 | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. | Lysine aminomutase. | 0.831 |
| lysAC_1 | bioB | Lgor_1365 | Lgor_3239 | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC). | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.562 |
| lysAC_1 | cpg2_2 | Lgor_1365 | Lgor_3280 | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC). | Carboxypeptidase G2. | 0.551 |
| lysAC_1 | efp | Lgor_1365 | Lgor_0693 | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC). | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. | 0.648 |
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