STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iucDL-lysine N6-monooxygenase. (438 aa)    
Predicted Functional Partners:
Lgor_0655
acyl-CoA synthetase.
 
 0.966
pksJ_1
Polyketide synthase, type I.
 
 0.941
frgA
Siderophore biosynthetic enzyme FrgA.
 
 
 0.929
Lgor_0726
Cupin domain protein.
       0.869
metG_2
methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.866
lgrD_2
Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 0.822
csiR
HTH-type transcriptional repressor CsiR.
       0.811
aacA-aphD_1
Aminoglycoside 6'-N-acetyltransferase.
  
 
 0.767
Lgor_0477
acyl-CoA synthetase.
 
 0.693
pksL_4
Polyketide synthase.
 
 0.641
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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