Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgor_0750 | per1 | Lgor_0750 | Lgor_0751 | Hypothetical protein. | Beta-lactamase. | 0.457 |
Lgor_1699 | Lgor_1864 | Lgor_1699 | Lgor_1864 | Putative secreted esterase. | Hypothetical protein. | 0.773 |
Lgor_1699 | dac | Lgor_1699 | Lgor_2873 | Putative secreted esterase. | D-Ala-D-Ala carboxypeptidase. | 0.403 |
Lgor_1699 | per1 | Lgor_1699 | Lgor_0751 | Putative secreted esterase. | Beta-lactamase. | 0.603 |
Lgor_1864 | Lgor_1699 | Lgor_1864 | Lgor_1699 | Hypothetical protein. | Putative secreted esterase. | 0.773 |
Lgor_1864 | per1 | Lgor_1864 | Lgor_0751 | Hypothetical protein. | Beta-lactamase. | 0.436 |
ampC_2 | per1 | Lgor_0593 | Lgor_0751 | Beta-lactamase. | Beta-lactamase. | 0.444 |
ampC_2 | ptpA_1 | Lgor_0593 | Lgor_2352 | Beta-lactamase. | Prolyl oligopeptidase. | 0.622 |
blaFEZ-1 | per1 | Lgor_2502 | Lgor_0751 | Metallo-beta-lactamase L1 precursor. | Beta-lactamase. | 0.451 |
blaFEZ-1 | ptpA_1 | Lgor_2502 | Lgor_2352 | Metallo-beta-lactamase L1 precursor. | Prolyl oligopeptidase. | 0.556 |
dac | Lgor_1699 | Lgor_2873 | Lgor_1699 | D-Ala-D-Ala carboxypeptidase. | Putative secreted esterase. | 0.403 |
dac | per1 | Lgor_2873 | Lgor_0751 | D-Ala-D-Ala carboxypeptidase. | Beta-lactamase. | 0.433 |
dacA | dacB_1 | Lgor_2472 | Lgor_3213 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family. | D-Ala-D-Ala carboxypeptidase. | 0.602 |
dacA | per1 | Lgor_2472 | Lgor_0751 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family. | Beta-lactamase. | 0.571 |
dacB_1 | dacA | Lgor_3213 | Lgor_2472 | D-Ala-D-Ala carboxypeptidase. | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family. | 0.602 |
dacB_1 | per1 | Lgor_3213 | Lgor_0751 | D-Ala-D-Ala carboxypeptidase. | Beta-lactamase. | 0.468 |
msrA_2 | per1 | Lgor_2106 | Lgor_0751 | Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Beta-lactamase. | 0.506 |
per1 | Lgor_0750 | Lgor_0751 | Lgor_0750 | Beta-lactamase. | Hypothetical protein. | 0.457 |
per1 | Lgor_1699 | Lgor_0751 | Lgor_1699 | Beta-lactamase. | Putative secreted esterase. | 0.603 |
per1 | Lgor_1864 | Lgor_0751 | Lgor_1864 | Beta-lactamase. | Hypothetical protein. | 0.436 |
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