Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lgor_0754Amidase. (222 aa)    
Predicted Functional Partners:
amiB
N-acetylmuramoyl-L-alanine amidase.
     
 0.906
Lgor_0755
Hypothetical protein.
       0.869
Lgor_0691
LD-carboxypeptidase.
     
 0.649
Lgor_2632
Muramoyltetrapeptide carboxypeptidase.
     
 0.649
mpl
UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
     
 0.592
ybbD
N-acetyl-beta-glucosaminidase.
     
 0.563
nagZ
Beta N-acetyl-glucosaminidase.
     
 0.563
Lgor_2517
Glycosyl hydrolase.
     
 0.563
pcpB
FAD dependent oxidoreductase.
       0.549
ycfS
Putative ErfK/YbiS/YcfS/YnhG family protein precursor.
     
  0.547
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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