Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgor_1713 | Lgor_2540 | Lgor_1713 | Lgor_2540 | Thiamine kinase. | Putative secreted esterase. | 0.774 |
Lgor_1713 | ahlD | Lgor_1713 | Lgor_0212 | Thiamine kinase. | Zn-dependent hydrolase GumP. | 0.686 |
Lgor_1713 | desA | Lgor_1713 | Lgor_1709 | Thiamine kinase. | Delta(12)-fatty-acid desaturase. | 0.942 |
Lgor_1713 | mcrA | Lgor_1713 | Lgor_0783 | Thiamine kinase. | FAD linked oxidase. | 0.637 |
Lgor_1713 | pksL_3 | Lgor_1713 | Lgor_1710 | Thiamine kinase. | Hypothetical protein. | 0.945 |
Lgor_1713 | pksL_4 | Lgor_1713 | Lgor_2037 | Thiamine kinase. | Polyketide synthase. | 0.729 |
Lgor_1713 | traI_2 | Lgor_1713 | Lgor_2580 | Thiamine kinase. | Putative conjugative transfer protein TraI. | 0.774 |
Lgor_2540 | Lgor_1713 | Lgor_2540 | Lgor_1713 | Putative secreted esterase. | Thiamine kinase. | 0.774 |
Lgor_2540 | ahlD | Lgor_2540 | Lgor_0212 | Putative secreted esterase. | Zn-dependent hydrolase GumP. | 0.685 |
Lgor_2540 | desA | Lgor_2540 | Lgor_1709 | Putative secreted esterase. | Delta(12)-fatty-acid desaturase. | 0.746 |
Lgor_2540 | mcrA | Lgor_2540 | Lgor_0783 | Putative secreted esterase. | FAD linked oxidase. | 0.685 |
Lgor_2540 | pksL_3 | Lgor_2540 | Lgor_1710 | Putative secreted esterase. | Hypothetical protein. | 0.774 |
Lgor_2540 | pksL_4 | Lgor_2540 | Lgor_2037 | Putative secreted esterase. | Polyketide synthase. | 0.878 |
Lgor_2540 | traI_2 | Lgor_2540 | Lgor_2580 | Putative secreted esterase. | Putative conjugative transfer protein TraI. | 0.774 |
ahlD | Lgor_1713 | Lgor_0212 | Lgor_1713 | Zn-dependent hydrolase GumP. | Thiamine kinase. | 0.686 |
ahlD | Lgor_2540 | Lgor_0212 | Lgor_2540 | Zn-dependent hydrolase GumP. | Putative secreted esterase. | 0.685 |
ahlD | desA | Lgor_0212 | Lgor_1709 | Zn-dependent hydrolase GumP. | Delta(12)-fatty-acid desaturase. | 0.650 |
ahlD | mcrA | Lgor_0212 | Lgor_0783 | Zn-dependent hydrolase GumP. | FAD linked oxidase. | 0.756 |
ahlD | ndoR | Lgor_0212 | Lgor_2387 | Zn-dependent hydrolase GumP. | Xylene monooxygenase. | 0.673 |
ahlD | pksL_3 | Lgor_0212 | Lgor_1710 | Zn-dependent hydrolase GumP. | Hypothetical protein. | 0.608 |
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