Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
abcT3ABC transporter ATP binding protein. (432 aa)    
Predicted Functional Partners:
thi
Thiamine biosynthesis protein NMT-1.
  
 0.987
cmpB
ABC transporter permease.
 
   
 0.980
Lgor_0655
acyl-CoA synthetase.
  
 
 0.860
yieF
Chromate reductase, Class I, flavoprotein.
  
 
 0.561
Lgor_0803
Hypothetical protein.
    
  0.523
ugpA
Sn-glycerol-3-phosphate transport system permease protein UgpA.
    
  0.504
mcp4
Chemotaxis signal transducer.
     
  0.461
glnK
Carbamoylphosphate synthase large subunit; Belongs to the P(II) protein family.
    
 
 0.454
Lgor_0354
Nitrogen regulatory protein P-II.
    
 
 0.454
ugpB
Glycerol-3-phosphate-binding periplasmic protein precursor.
    
  0.436
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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