STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcT3ABC transporter ATP binding protein. (432 aa)    
Predicted Functional Partners:
cmpB
ABC transporter permease.
 
   
 0.971
thi
Thiamine biosynthesis protein NMT-1.
  
 
 0.965
Lgor_0655
acyl-CoA synthetase.
  
 
 0.841
yieF
Chromate reductase, Class I, flavoprotein.
  
 
 0.665
ugpA
Sn-glycerol-3-phosphate transport system permease protein UgpA.
    
  0.601
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
  
  
 
0.590
ugpB
Glycerol-3-phosphate-binding periplasmic protein precursor.
    
  0.567
ugpE
Sn-glycerol-3-phosphate transport system permease protein UgpE; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
   
  0.564
Lgor_0803
Hypothetical protein.
    
  0.546
uhpC_2
Major facilitator family transporter.
 
   
 0.448
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.