Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgor_0829 | Lgor_0830 | Lgor_0829 | Lgor_0830 | O-Antigen ligase. | Polysaccharide biosynthesis protein. | 0.940 |
Lgor_0829 | epsL | Lgor_0829 | Lgor_0963 | O-Antigen ligase. | Putative sugar transferase EpsL. | 0.550 |
Lgor_0829 | lacA | Lgor_0829 | Lgor_0828 | O-Antigen ligase. | Chloramphenicol acetyltransferase. | 0.536 |
Lgor_0829 | tuaA | Lgor_0829 | Lgor_0838 | O-Antigen ligase. | Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase. | 0.742 |
Lgor_0829 | wecB_3 | Lgor_0829 | Lgor_0972 | O-Antigen ligase. | UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. | 0.548 |
Lgor_0830 | Lgor_0829 | Lgor_0830 | Lgor_0829 | Polysaccharide biosynthesis protein. | O-Antigen ligase. | 0.940 |
Lgor_0830 | epsL | Lgor_0830 | Lgor_0963 | Polysaccharide biosynthesis protein. | Putative sugar transferase EpsL. | 0.886 |
Lgor_0830 | galE | Lgor_0830 | Lgor_0827 | Polysaccharide biosynthesis protein. | UDP-galactose-4-epimerase. | 0.458 |
Lgor_0830 | lacA | Lgor_0830 | Lgor_0828 | Polysaccharide biosynthesis protein. | Chloramphenicol acetyltransferase. | 0.628 |
Lgor_0830 | tuaA | Lgor_0830 | Lgor_0838 | Polysaccharide biosynthesis protein. | Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase. | 0.847 |
Lgor_0830 | wecB_3 | Lgor_0830 | Lgor_0972 | Polysaccharide biosynthesis protein. | UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. | 0.912 |
arnB_1 | epsL | Lgor_0975 | Lgor_0963 | AHBA synthase; Belongs to the DegT/DnrJ/EryC1 family. | Putative sugar transferase EpsL. | 0.956 |
arnB_1 | lacA | Lgor_0975 | Lgor_0828 | AHBA synthase; Belongs to the DegT/DnrJ/EryC1 family. | Chloramphenicol acetyltransferase. | 0.529 |
arnB_1 | tuaA | Lgor_0975 | Lgor_0838 | AHBA synthase; Belongs to the DegT/DnrJ/EryC1 family. | Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase. | 0.746 |
arnB_1 | wecB_3 | Lgor_0975 | Lgor_0972 | AHBA synthase; Belongs to the DegT/DnrJ/EryC1 family. | UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. | 0.939 |
arnB_2 | epsL | Lgor_2686 | Lgor_0963 | Polysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family. | Putative sugar transferase EpsL. | 0.956 |
arnB_2 | lacA | Lgor_2686 | Lgor_0828 | Polysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family. | Chloramphenicol acetyltransferase. | 0.529 |
arnB_2 | tuaA | Lgor_2686 | Lgor_0838 | Polysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family. | Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase. | 0.746 |
arnB_2 | wecB_3 | Lgor_2686 | Lgor_0972 | Polysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family. | UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. | 0.804 |
btrR | epsL | Lgor_0965 | Lgor_0963 | Aminotransferase WecE; Belongs to the DegT/DnrJ/EryC1 family. | Putative sugar transferase EpsL. | 0.992 |
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