STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0882Hypothetical protein. (958 aa)    
Predicted Functional Partners:
cls
Cardiolipin synthase.
  
    0.788
lspJ
Type II secretory pathway protein LspJ.
   
 0.711
Lgor_0884
Hypothetical protein.
       0.642
lspK
Type II secretory pathway protein LspK.
   
 
 0.567
lspE_1
Type II protein secretion ATPase LspE.
   
  0.508
lspE_2
Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
   
  0.508
pilB
Pilus assembly protein PilB.
   
  0.508
Lgor_0630
DNA internalization-related competence protein ComEC/Rec2.
   
  
 0.424
tadA_1
tRNA-specific adenosine deaminase.
       0.400
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.