STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gntTH gluconate symporter. (428 aa)    
Predicted Functional Partners:
Lgor_0885
Chloromuconate cycloisomerase.
 
     0.832
Lgor_3102
Hypothetical protein.
  
     0.767
Lgor_1596
Protein kinase.
  
     0.766
Lgor_0455
Calcium-transporting ATPase.
  
     0.765
Lgor_0650
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
 
     0.764
Lgor_1864
Hypothetical protein.
  
     0.764
Lgor_1199
Hypothetical protein.
  
     0.762
celC
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.759
Lgor_1684
L-gulono-gamma-lactone oxidase.
  
     0.757
Lgor_1583
Acyltransferase.
  
     0.755
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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