STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_0944Serine protein kinase. (643 aa)    
Predicted Functional Partners:
spo
SpoVR family protein.
 
  
 0.993
Lgor_0945
Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family.
 
  
 0.992
wrbA
Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family.
   
    0.584
dps1
Ferritin; Belongs to the Dps family.
   
    0.570
dps2
DNA-binding protein; Belongs to the Dps family.
   
    0.570
ldh
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.526
pepN_1
Aminopeptidase.
       0.521
phoH
PhoH protein.
   
  
 0.474
ohrB
Organic hydroperoxide resistance protein.
   
    0.424
rpoS
RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
  
    0.400
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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