STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yieFChromate reductase, Class I, flavoprotein. (186 aa)    
Predicted Functional Partners:
Lgor_0655
acyl-CoA synthetase.
  
 0.801
ndoR
Xylene monooxygenase.
     
  0.719
thi
Thiamine biosynthesis protein NMT-1.
  
 
 0.696
Lgor_2040
Putative RNA helicase.
  
    0.619
ribF
Riboflavin biosynthesis protein RibF (riboflavin kinase/FMN adenylyltransferase); Belongs to the ribF family.
    
 0.590
abcT3
ABC transporter ATP binding protein.
  
 
 0.561
thiF_2
Thiazole biosynthesis adenylyltransferase ThiF.
    
 0.499
Lgor_0870
Putative nitroreductase.
     
 0.475
drgA
Nitroreductase.
     
 0.475
yjjG
Haloacid dehalogenase.
    
  0.433
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.