Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
wztABC transporter of LPS O-antigen. (251 aa)    
Predicted Functional Partners:
Lgor_0966
ABC-2 type transporter.
 
 0.997
ctrC
Capsule polysaccharide export inner-membrane protein ctrC.
 0.984
ctrB
Capsule polysaccharide export inner-membrane protein ctrB.
 
 
 0.909
kpsD
Polysialic acid transport protein KpsD precursor.
  
 
 0.791
bexD
Capsule polysaccharide export protein bexD precursor.
  
 
 0.791
epsL
Putative sugar transferase EpsL.
     
 0.784
btrR
Aminotransferase WecE; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.748
dapH
Chloramphenicol acetyltransferase.
       0.738
comF
Competence protein ComF.
   
    0.625
gyrB
DNA gyrase, subunit B (type II topoisomerase); A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP [...]
      
 0.494
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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