STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pimB_1Glycosyl transferase, group 1. (472 aa)    
Predicted Functional Partners:
cpsB
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.765
pksL_4
Polyketide synthase.
  
 0.736
Lgor_0211
3-beta hydroxysteroid dehydrogenase/isomerase.
 
 
 0.679
tuaA
Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase.
 
 
 0.673
traI_2
Putative conjugative transfer protein TraI.
  
     0.664
Lgor_1705
TPR repeat-containing protein.
  
    0.651
Lgor_2640
D12 class N6 adenine-specific DNA methyltransferase.
  
     0.650
Lgor_1713
Thiamine kinase.
  
     0.641
pksL_3
Hypothetical protein.
  
 
  0.635
epsL
Putative sugar transferase EpsL.
 
 
 0.632
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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