Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
iolEMyo-inositol catabolism protein iolE. (296 aa)    
Predicted Functional Partners:
iolD
Malonic semialdehyde oxidative decarboxylase; Belongs to the TPP enzyme family.
 
 
 0.999
iolG
Myo-inositol 2-dehydrogenase.
 
 
 0.998
iolCB
IolC/IolB transferase kinase protein.
 
 0.994
galP
Sugar-proton symporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
    0.818
mviM
Oxidoreductase.
 
 
 0.763
pheA_3
2-methylcitrate synthase.
     
  0.739
trpE
Anthranilate synthase.
    
  0.736
psuK
Carbohydrate kinase, pfkB family.
 
 
 0.721
hmgA
Homogentisate 1,2-dioxygenase.
     
 0.641
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
    
  0.580
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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