STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_1089RasGEF domain protein. (967 aa)    
Predicted Functional Partners:
Lgor_1088
L-gulono-gamma-lactone oxidase.
 
 
   0.885
Lgor_1550
Eukaryotic huntingtin interacting protein B.
  
 
  0.849
Lgor_2363
Hypothetical protein.
  
     0.747
Lgor_2911
HEAT repeat protein.
  
     0.732
Lgor_2784
Leucine-rich repeat protein substrate of the Dot/Icm secretion system.
  
     0.686
Lgor_2480
Ankyrin repeats (3 copies).
  
     0.684
Lgor_2150
Coiled-coil protein.
  
    0.679
Lgor_1236
Ankyrin repeat-containing protein.
  
     0.663
Lgor_2662
Ankyrin repeats (3 copies).
  
     0.661
Lgor_0655
acyl-CoA synthetase.
    
 0.624
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.