STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_1090Secreted protein. (393 aa)    
Predicted Functional Partners:
Lgor_0655
acyl-CoA synthetase.
  
 0.947
Lgor_0477
acyl-CoA synthetase.
   
 0.873
pksL_4
Polyketide synthase.
 
 0.870
pksJ_1
Polyketide synthase, type I.
 
 
 0.821
lgrD_2
Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 0.812
Lgor_0650
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
 
 
 0.735
pdhB_1
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
    
 0.683
pta_2
Phosphate acetyl/butaryl transferase.
    
 0.678
pta_1
Phosphate acetyl/butaryl transferase.
    
 0.678
guaA
GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
   
  0.677
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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