STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_1105Peptidase family M23. (502 aa)    
Predicted Functional Partners:
amiB
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.773
nlpD
Hypothetical protein.
  
   
 0.755
mltD
Membrane-bound lytic murein transglycosylase D.
 
 
 0.728
envC
Peptidase, M23 family.
  
   
 0.723
cphA_1
Cyanophycin synthetase.
    
 0.716
cphA_2
Cyanophycin synthetase.
    
 0.716
cphA_3
Cyanophycin synthetase.
    
 0.716
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
       0.558
lepB_1
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.488
mrcA
Putative peptidoglycan synthetase, penicillin-binding protein 1A.
  
   
 0.472
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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