STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_1109(2-pyrone-4,6-)dicarboxylic acid hydrolase. (252 aa)    
Predicted Functional Partners:
Lgor_3253
5-carboxyvanillate decarboxylase.
 
  
 0.740
ndoR
Xylene monooxygenase.
    
 0.673
Lgor_0885
Chloromuconate cycloisomerase.
    
 0.667
pcpB
FAD dependent oxidoreductase.
  
  
  0.662
Lgor_2703
Amidase.
  
  
  0.615
tdh
Threonine(-3-)dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
  
 
  0.585
iolG
Myo-inositol 2-dehydrogenase.
    
 0.576
mviM
Oxidoreductase.
    
 0.576
fpr
ferredoxin-NADP reductase.
     
 0.571
Lgor_1108
Hypothetical protein.
       0.484
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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