Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgor_1116 | lidP | Lgor_1116 | Lgor_1115 | Hypothetical protein. | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.636 |
Lgor_1116 | rlmB | Lgor_1116 | Lgor_1114 | Hypothetical protein. | tRNA/rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | 0.636 |
Lgor_1116 | rpiA | Lgor_1116 | Lgor_1113 | Hypothetical protein. | Ribose 5-phosphate isomerase, constitutive; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.636 |
Lgor_1116 | yaiI | Lgor_1116 | Lgor_1117 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0178 family. | 0.560 |
lidP | Lgor_1116 | Lgor_1115 | Lgor_1116 | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Hypothetical protein. | 0.636 |
lidP | rlmB | Lgor_1115 | Lgor_1114 | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | tRNA/rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | 0.943 |
lidP | rpiA | Lgor_1115 | Lgor_1113 | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Ribose 5-phosphate isomerase, constitutive; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.791 |
lidP | yaiI | Lgor_1115 | Lgor_1117 | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Hypothetical protein; Belongs to the UPF0178 family. | 0.483 |
rlmB | Lgor_1116 | Lgor_1114 | Lgor_1116 | tRNA/rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Hypothetical protein. | 0.636 |
rlmB | lidP | Lgor_1114 | Lgor_1115 | tRNA/rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.943 |
rlmB | rpiA | Lgor_1114 | Lgor_1113 | tRNA/rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Ribose 5-phosphate isomerase, constitutive; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.791 |
rlmB | yaiI | Lgor_1114 | Lgor_1117 | tRNA/rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Hypothetical protein; Belongs to the UPF0178 family. | 0.483 |
rpiA | Lgor_1116 | Lgor_1113 | Lgor_1116 | Ribose 5-phosphate isomerase, constitutive; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | Hypothetical protein. | 0.636 |
rpiA | lidP | Lgor_1113 | Lgor_1115 | Ribose 5-phosphate isomerase, constitutive; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.791 |
rpiA | rlmB | Lgor_1113 | Lgor_1114 | Ribose 5-phosphate isomerase, constitutive; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | tRNA/rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | 0.791 |
rpiA | yaiI | Lgor_1113 | Lgor_1117 | Ribose 5-phosphate isomerase, constitutive; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | Hypothetical protein; Belongs to the UPF0178 family. | 0.484 |
yaiI | Lgor_1116 | Lgor_1117 | Lgor_1116 | Hypothetical protein; Belongs to the UPF0178 family. | Hypothetical protein. | 0.560 |
yaiI | lidP | Lgor_1117 | Lgor_1115 | Hypothetical protein; Belongs to the UPF0178 family. | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.483 |
yaiI | rlmB | Lgor_1117 | Lgor_1114 | Hypothetical protein; Belongs to the UPF0178 family. | tRNA/rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | 0.483 |
yaiI | rpiA | Lgor_1117 | Lgor_1113 | Hypothetical protein; Belongs to the UPF0178 family. | Ribose 5-phosphate isomerase, constitutive; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.484 |