Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bprVSerine protease; Belongs to the peptidase S8 family. (558 aa)    
Predicted Functional Partners:
aprX
Subtilisin-like serine protease.
  
 
 0.729
ftsK
DNA translocase FtsK.
    
 
 0.706
Lgor_1199
Hypothetical protein.
  
  
 0.704
Lgor_1864
Hypothetical protein.
  
 
   0.650
chiA1
Chitinase A1 precursor.
  
  
  0.632
Lgor_1684
L-gulono-gamma-lactone oxidase.
  
 
  0.621
chiD
Chitinase.
  
 
 0.599
Lgor_1596
Protein kinase.
  
    0.570
Lgor_3102
Hypothetical protein.
  
    0.555
celC
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
  0.553
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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