STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_1213NAD dependent epimerase/dehydratase. (949 aa)    
Predicted Functional Partners:
Lgor_0465
Hypothetical protein.
  
    0.759
Lgor_1728
Cytochrome P450.
  
     0.736
Lgor_0702
Conserved protein of unknown function.
  
     0.725
Lgor_2064
Ankyrin repeat-containing protein.
  
     0.721
Lgor_0181
Cyclic nucleotide-binding protein.
  
     0.706
Lgor_2826
Cytochrome P450.
  
     0.696
Lgor_0673
Phospholipase/lecithinase/hemolysin.
  
     0.692
Lgor_1253
Hypothetical protein.
  
     0.655
minE
Septum formation topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
  
 0.613
chiD
Chitinase.
  
    0.566
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.