STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilMTfp pilus assembly protein, ATPase PilM. (364 aa)    
Predicted Functional Partners:
pilN
Tfp pilus assembly protein PilN.
 
 0.999
pilO
Tfp pilus assembly protein PilO.
 
 
 0.991
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
 
 0.991
pilP
Tfp pilus assembly protein PilP.
 
 
 0.979
Lgor_1147
LysM domain-containing protein.
  
 
   0.930
Lgor_0076
Fimbrial assembly protein (PilN).
  
 0.918
pilZ_2
Type 4 fimbrial biogenesis protein PilZ.
  
   
 0.819
pilC_2
Pilus assembly protein PilC.
 
 
 
 0.813
uptC
Type II secretion system protein.
  
  
 0.791
pilE_2
Type-IV pilin.
 
   
 0.758
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.