STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilQType IV pilus (Tfp) assembly protein PilQ. (701 aa)    
Predicted Functional Partners:
pilN
Tfp pilus assembly protein PilN.
 
 
 0.997
pilP
Tfp pilus assembly protein PilP.
 
 
 0.997
pilM
Tfp pilus assembly protein, ATPase PilM.
 
 
 0.995
pilO
Tfp pilus assembly protein PilO.
 
 
 0.994
Lgor_1147
LysM domain-containing protein.
  
 
 
 0.963
pilE_3
Tfp pilus assembly protein, major type IV pilin class A; Belongs to the N-Me-Phe pilin family.
 
   
 0.840
Lgor_0076
Fimbrial assembly protein (PilN).
  
 
 0.827
pilZ_2
Type 4 fimbrial biogenesis protein PilZ.
  
   
 0.819
uptC
Type II secretion system protein.
  
  
 0.809
pilE_2
Type-IV pilin.
 
   
 0.797
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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