Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgor_0071 | bcsA | Lgor_0071 | Lgor_1237 | Tetratricopeptide repeat protein. | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | 0.707 |
Lgor_0071 | cph2_5 | Lgor_0071 | Lgor_1215 | Tetratricopeptide repeat protein. | Regulatory protein (GGDEF and EAL domains). | 0.808 |
Lgor_0071 | gmr_2 | Lgor_0071 | Lgor_1047 | Tetratricopeptide repeat protein. | Regulatory protein (GGDEF domain). | 0.833 |
Lgor_1231 | bcsA | Lgor_1231 | Lgor_1237 | Hypothetical protein. | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | 0.867 |
Lgor_1231 | bcsB | Lgor_1231 | Lgor_1238 | Hypothetical protein. | Cyclic di-GMP-binding protein precursor; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family. | 0.827 |
Lgor_1231 | bcsC | Lgor_1231 | Lgor_1232 | Hypothetical protein. | Cellulose synthase operon protein C precursor. | 0.783 |
Lgor_1231 | bcsZ | Lgor_1231 | Lgor_1239 | Hypothetical protein. | Endoglucanase precursor. | 0.825 |
Lgor_1411 | bcsA | Lgor_1411 | Lgor_1237 | Photosystem I assembly protein Ycf3. | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | 0.707 |
Lgor_1411 | cph2_5 | Lgor_1411 | Lgor_1215 | Photosystem I assembly protein Ycf3. | Regulatory protein (GGDEF and EAL domains). | 0.808 |
Lgor_1411 | gmr_2 | Lgor_1411 | Lgor_1047 | Photosystem I assembly protein Ycf3. | Regulatory protein (GGDEF domain). | 0.833 |
bcsA | Lgor_0071 | Lgor_1237 | Lgor_0071 | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | Tetratricopeptide repeat protein. | 0.707 |
bcsA | Lgor_1231 | Lgor_1237 | Lgor_1231 | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | Hypothetical protein. | 0.867 |
bcsA | Lgor_1411 | Lgor_1237 | Lgor_1411 | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | Photosystem I assembly protein Ycf3. | 0.707 |
bcsA | bcsB | Lgor_1237 | Lgor_1238 | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | Cyclic di-GMP-binding protein precursor; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family. | 0.999 |
bcsA | bcsC | Lgor_1237 | Lgor_1232 | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | Cellulose synthase operon protein C precursor. | 0.837 |
bcsA | bcsZ | Lgor_1237 | Lgor_1239 | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | Endoglucanase precursor. | 0.973 |
bcsA | cph2_5 | Lgor_1237 | Lgor_1215 | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | Regulatory protein (GGDEF and EAL domains). | 0.860 |
bcsA | galU | Lgor_1237 | Lgor_1234 | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | Glucose-1-phosphate uridylyltransferase. | 0.725 |
bcsA | gmr_2 | Lgor_1237 | Lgor_1047 | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | Regulatory protein (GGDEF domain). | 0.868 |
bcsA | yrrB | Lgor_1237 | Lgor_0489 | Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. | Protein with TPR motifs (protein-protein interaction motif). | 0.717 |
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