Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
yggRTransporter. (344 aa)    
Predicted Functional Partners:
pilD
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.814
pilC_2
Pilus assembly protein PilC.
 
   
 0.802
pilC_1
Pilus assembly protein PilC.
 
   
 0.799
pilM
Tfp pilus assembly protein, ATPase PilM.
 
   
 0.762
lspF
Type II secretory pathway protein LspF.
 
   
 0.759
Lgor_1250
Pyridoxal-5'-phosphate dependent enzyme family transporter protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.728
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
   
 0.687
pilO
Tfp pilus assembly protein PilO.
 
  
 0.580
pilB
Pilus assembly protein PilB.
 
 
0.525
lspE_1
Type II protein secretion ATPase LspE.
 
 
0.522
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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